Your not the only one that has this issue everything was working fine up until a week and a half ago with my nexus
I have my sampling rates matched. The firmware and software updated. I am exhausted from crawling through as many forums as possible dealing with latency issues and recording. Ive tried every different possible sampling rate that the mixer has to offer and still no luck in fixing the click and pops along with the fast pitched playback generated after the recording is finished. I am beginning to suspect this is a hardware issue.
If there isn't another driver update I will be shipping my nexus back due to it still being under warranty. Ive had nothing but headaches since I bought this mixer. Not a happy customer..