The issue here is a poorly produced track. The producer made an error in timing for when the break ends.
The only way to deal with this in Rekordbox is to adjust the grid in sections. There is a button which locks all previous grid markers and then allows you to stretch/shrink the spacing for only markers after the set point. You could adjust the beginning of the track, and then lock the grid before that breakdown. Then stretch the grid and lock on the first beat at the end of the breakdown, and then adjust the remainder of the track's grid markers.
It's not the perfect solution, but it's about all you can do without editing the track in DAW software.