try this setting https://www.youtube.com/watch?v=BCEBMa0zB0Y with this mapp http://www.traktorbible.com/freaks/mappingview.aspx?id=716 maybe it will help u ;)
[SOLVED] XDJ-R1 and Traktor Audio Problem
This is my first post, so be nice Please :)
So I have just purchased a DJX-R1 and I plugged it into traktor and selected to use the DJX-R1 mixer instead of the PC mixer. When I went to play music on the right hand side deck it played through the left side deck channel and I then played something from Left hand deck and it was also playing through the same channel. It seems to be missed out the right hand side channel. I thought it might have been a settings problem so I checked and everything look fine and it's not a driver problem cause I running Mac. Does anyone know whats going on?
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So I have solved the problem. It was annoying me the fact I couldn't use traktor and the external mixer on my DJX-R1 cause that why I got the unit in the first place, I love the colour FXs. So tonight I got a beer and sat down and hit my traktor audio preferences and after three beers and alot of screaming I finally found the correct settings. Note: I have both channels working externally and with stereo headphone cueing (which before it didn't have.) To get these audio settings download the Tsi and just select to import the audio settings cause otherwise you will get my weird XDJ-R1 mapping or you can use it :P Hope this answers everyones questions on this.
@Josh > thanks for reporting back; chances are you simply had the audio output routing backwards! Let us know if you have any other questions.