I am not doing a full comparison for you but there are differences apart from the missing CD drive.
i.e.
Audio Quality / distortion
Number of Hot cues (XDJ = 3, CDJ = 8)
Jog Wheel LEDs indicating if the track is running or come to an end.
More Hardware buttons
I am having XDJ-1000 MK1 and I am pretty pleased with them. I may consider to purchase new XDJ's in the future when the XDJ-1000MK2 might be replaced by PioneerDJ. :-)
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