DDJ-1000 Beat FX does not Auto Detect BPM on External Input when using Rekordbox

When using the DDJ-1000 standalone, the auto bpm detection works great with an external input.  The moment I load up Rekordbox the auto detect BPM goes to 120 BPM and will not change.  Selecting Rekordbox decks the auto BPM works fine and on Master out it works fine as well.  It seems to only be related to external input decks.